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Publication Information

PubMed ID
Public Release Type
Journal
Publication Year
2023
Affiliation
Critical Path Institute
Authors
David SE, Henscheid N, Karpen SR, Pauley M, Podichetty JT, Romero K
Studies

Abstract

While islet autoantibodies (AAs) are well established risk factors for developing type 1 diabetes (T1D), there is a lack of biomarkers endorsed by regulators to enrich clinical trial populations for those at risk of developing type 1 diabetes (T1D). As such, the development of therapies that delay or prevent the onset of T1D remains challenging. To address this drug development need, the Critical Path Institute’s T1D Consortium acquired patient-level data from multiple observational studies and used a model-based approach to evaluate the utility of islet autoantibodies (AAs) as enrichment biomarkers in clinical trials. An accelerated failure time model was developed, which provided the underlying evidence required to receive a qualification opinion for islet autoantibodies as enrichment biomarkers from the European Medicines Agency in March of 2022. To further democratize the use of the model to scientists and clinicians, a T1D Clinical Trial Enrichment Graphical User Interface (GUI) was developed. The interactive tool allows users to specify trial participant characteristics, including the percentage of participants with a specific AA combination. Users can specify ranges for participant baseline age, sex, blood glucose measurement from the 120-minute timepoints of an oral glucose tolerance test, and hemoglobin A1c. The tool then applies the model to predict the mean probability of a T1D diagnosis for that trial population and renders the results to the user. To ensure adequate data privacy and to make the tool open-source, a deep learning-based generative model was used to generate a cohort of synthetic subjects that underpins the tool.